usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 50.0665789473684 33.4380526315789 39.5337368421053 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 902 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 412 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 412 Number of spheres polar: 222, nonpolar: 147, out of current total: 412 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.17646 60.05429 23.45723 43.42228 29.56434 49.48619 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 108 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 79 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 36 Final number of output spheres is: 36 Number of polar spheres: 14 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 19