usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 20.0523888888889 14.2306666666667 52.8137777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 952 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 521 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 521 Number of spheres polar: 230, nonpolar: 244, out of current total: 521 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.07248 27.92453 4.34029 24.03756 42.82954 62.74911 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 155 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 119 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 88 Spheres center of coords (x y z): 16.5917664772727 15.3234998863636 56.9284909090909 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.51936295074857 Final number of output spheres is: 45 Number of polar spheres: 25 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 18