usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 50.2468421052632 33.4938947368421 39.7114210526316 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 793 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 366 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 365 Number of spheres polar: 212, nonpolar: 114, out of current total: 365 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.26158 60.11392 23.51781 43.36441 29.80504 49.42024 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 165 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 131 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 54 Final number of output spheres is: 54 Number of polar spheres: 23 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 19