usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 57.6588947368421 38.2221578947368 42.96
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1838
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 846
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 845
Number of spheres polar: 334, nonpolar: 368, out of current total: 845
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 47.73913 67.49635 28.22456 47.94717 32.97334 52.84978
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 394
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 344
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 343
Spheres center of coords (x y z): 59.6824608746356 34.945298483965 43.031933877551
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.62522902379686
Final number of output spheres is: 60
Number of polar spheres: 33
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 19