usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 19.9645555555556 14.0493333333333 53.3465555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2183 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 398 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 398 Number of spheres polar: 249, nonpolar: 124, out of current total: 398 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.07617 28.72024 4.10654 23.97200 43.43826 63.31126 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 106 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 79 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 40 Final number of output spheres is: 40 Number of polar spheres: 23 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 18