usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 19.9645555555556 14.0493333333333 53.3465555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2183 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 398 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 398 Number of spheres polar: 249, nonpolar: 124, out of current total: 398 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.07617 28.72024 4.10654 23.97200 43.43826 63.31126 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 178 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 140 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 72 Spheres center of coords (x y z): 19.9756795833333 14.3095058333333 53.6972070833333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.59947790108 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 18