DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-03.c.bkslab.org 10-Apr-12 19:34:47 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1770720 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 26.41500 -39.32600 82.77800 grid max 66.41500 -0.8260000 121.2780 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 33 0 0 0 0 0 29 non-zero colors in receptor sphere cluster cluster 1 with 33 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 maximum receptor sphere-sphere distance 10.74237 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 NOC_434_1 1618 16678 19 36 10.0 0.04 E NOC_434_1 2 -10.47 -3.75 8.69 1.17 -4.36 2 NOC_434_1 2259 26497 19 36 11.0 0.06 E NOC_434_1 4 -30.21 28.33 8.67 1.00 7.79 3 NOC_434_1 1618 109986 19 36 118.9 0.15 E NOC_434_1 2 -24.86 -13.13 8.82 0.96 -28.21 4 NOC_434_1 1161 43219 19 36 65.7 0.07 E NOC_434_1 4 -24.45 -13.91 8.82 0.98 -28.56 5 NOC_434_1 1618 13104 19 27 6.0 0.05 E NOC_434_1 2 -27.49 9.15 8.81 1.21 -8.32 6 NOC_434_1 1405 14811 19 27 8.0 0.03 E NOC_434_1 4 -19.53 20.79 8.64 0.83 10.73 7 NOC_434_1 1618 36039 19 36 16.0 0.06 E NOC_434_1 2 -20.25 -7.33 8.53 0.77 -18.28 8 NOC_434_1 1349 19264 19 36 20.6 0.04 E NOC_434_1 4 -0.68 31.23 8.42 0.75 39.71 9 NOC_434_1 1618 57916 19 36 42.0 0.09 E NOC_434_1 2 -10.56 3.47 12.03 0.75 5.69 10 NOC_434_1 4918 122092 19 36 109.8 0.20 E NOC_434_1 4 -25.44 10.75 11.98 0.76 -1.95 11 NOC_434_1 1617 58275 19 36 21.2 0.09 E NOC_434_1 2 -25.43 -14.71 12.02 0.74 -27.38 12 NOC_434_1 1051 54927 19 36 76.9 0.08 E NOC_434_1 4 -27.41 -17.19 12.00 0.71 -31.88 13 NOC_434_1 1618 39156 19 36 52.0 0.08 E NOC_434_1 2 -24.79 15.27 11.98 0.77 3.23 14 NOC_434_1 847 31767 19 36 44.0 0.05 E NOC_434_1 4 -25.48 18.94 11.97 0.74 6.17 15 NOC_434_1 1618 33441 19 45 44.0 0.06 E NOC_434_1 2 -5.39 12.47 11.82 1.04 19.93 16 NOC_434_1 3383 10209 19 45 4.3 0.04 E NOC_434_1 4 -22.76 43.16 11.52 0.77 32.69 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 96240 for debugging, time = 2.180000 solvation corrected scores: (a) 1 NOC_434_1 score: -31.882 nathvy = 19 nconfs = 36 2 NOC_434_1 score: -28.556 nathvy = 19 nconfs = 36 3 NOC_434_1 score: -28.205 nathvy = 19 nconfs = 36 4 NOC_434_1 score: -27.380 nathvy = 19 nconfs = 36 5 NOC_434_1 score: -18.275 nathvy = 19 nconfs = 36 6 NOC_434_1 score: -8.319 nathvy = 19 nconfs = 27 7 NOC_434_1 score: -4.363 nathvy = 19 nconfs = 36 8 NOC_434_1 score: -1.951 nathvy = 19 nconfs = 36 9 NOC_434_1 score: 3.226 nathvy = 19 nconfs = 36 10 NOC_434_1 score: 5.690 nathvy = 19 nconfs = 36 11 NOC_434_1 score: 6.165 nathvy = 19 nconfs = 36 12 NOC_434_1 score: 7.789 nathvy = 19 nconfs = 36 13 NOC_434_1 score: 10.732 nathvy = 19 nconfs = 27 14 NOC_434_1 score: 19.935 nathvy = 19 nconfs = 45 15 NOC_434_1 score: 32.689 nathvy = 19 nconfs = 45 16 NOC_434_1 score: 39.711 nathvy = 19 nconfs = 36 Date and Time: 10-Apr-12 19:34:52 elapsed time (sec): 2.1900