Creating binding-site residue list Creating molecular surface real 0m17.996s user 0m0.387s sys 0m0.176s Creating sphgen spheres Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 0: 875 spheres. 164. 164. 167. 167. 378. 378. 378. 387. 387. 387. 387. 392. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 395. 397. 397. 411. 411. 411. 411. 412. 412. 417. 417. 419. 419. 419. 419. 419. 419. 419. 426. 426. 427. 427. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 428. 434. 442. 442. 442. 447. 562. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 563. 564. 564. 564. 564. 573. 573. 583. 583. 583. 583. 583. 612. 612. 612. 612. 617. 620. 621. 621. 624. 805. 805. 805. 805. 805. 805. 805. 805. 808. 809. 809. 809. 809. 809. 809. 809. 809. 809. 809. 809. 811. 811. 811. 811. 811. 811. 812. 812. 987. 989. 989. 993. 993. 993. 993. 993. 993. 993. 995.1004.1151.1151.1151.1151.1155.1155.1155.1161.1161.1161.1161.1161.1169.1169.1169.1169.1169.1169.1169.1169.1170.1170.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1178.1180.1182.1184.1185.1185.1185.1185.1195.1195.1195.1195.1334.1334.1334.1334.1334.1334.1334.1334.1349.1351.1352.1352.1353.1353.1353.1353.1353.1353.1354.1354.1354.1355.1355.1355.1355.1355.1355.1355.1355.1375.1389.1389.1389.1389.1389.1389.1389.1389.1389.1390.1390.1390.1407.1407.1407.1407.1407.1407.1407.1407.1407.1407.1407.1407.1407.1407.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1409.1410.1410.1410.1410.1410.1410.1410.1410.1410.1410.1418.1418.1433.1433.1433.1433.1433.1433.1434.1434.1434.1437.1438.1438.1438.1438.1438.1439.1439.1439.1439.1439.1439.1439.1439.1439.1441.1441.1441.1441.1441.1441.1441.1441.1441.1441.1443.1443.1444.1446.1446.1446.1446.1446.1446.1446.1467.1467.1467.1467.1478.1481.1504.1504.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.1506.2126.2126.2126.2126.2126.2126.2127.2140.2142.2148.2148.2148.2152.2152.2153.2154.2155.2155.2155.2155.2155.2155.2155.2155.2155.2155.2155.2158.2158.2158.2158.2158.2158.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2159.2160.2160.2160.2161.2161.2161.2162.2162.2162.2162.2162.2162.2163.2163.2163.2164.2164.2164.2165.2165.2165.2165.2165.2166.2166.2166.2167.2167.2167.2167.2167.2169.2169.2169.2169.2169.2169.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2170.2395.2401.2401.2403.2403.2404.2404.2404.2411.2411.2434.2434.2434.2434.2434.2434.2434.2434.2434.2434.2435.2435.2435.2435.2435.2447.2449.2449.2449.2449.2449.2449.2449.2449.2454.2454.2454.2454.2454.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2455.2457.2457.2457.2457.2457.2457.2457.2458.2458.2458.2458.2458.2458.2458.2460.2460.2462.2462.2462.2462.2463.2463.2468.2468.2468.2471.2474.2474.2474.2474.2474.2474.2474.2474.2474.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2477.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2478.2479.2479.2479.2485.2485.2485.2485.2485.2485.2486.2490.2490.2490.2490.2490.2490.2490.2490.2490.2490.2490.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2493.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2495.2496.2496.2496.2501.2501.2501.2501.2501.2501.2501.2501.2501.2501.2501.2503.2503.2503.2503.2503.2503.2503.2503.2503.2509.2509.2509.2509.2510.2510.2510.2510.2510.2510.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2511.2523.2523.2523.2523.2523.2523.2523.2523.2523.2523.2525.2525.2525.2525.2525.2525.2525.2525.2542.2542.2965.2966.2966.2966.2966.2966.2967.2967.2967.2967.2967.2967.2967.2967.2967.2967.2969.2969.2969.2969.2969.2969.2969.2969.2969.2969.2973.2973.2973.2973.2974.2974.2978.2978.2978.2978.2978.2978.2978.2978.2978.2978.2978.2978.2978.2978.2983.2983.2987.2989.2989.2989.2989.2989.2989.2989.2989.2989.2989.2989.2990.2990.2990.2995.2995.2996.2996.3001.3001.3002.3002.3002.3002.3002.3002.3003.3003.3003.3003.3004.3004.3004.3006.3006.3006.3006.3006.3006.3006.3006.FORTRAN STOP Generating faster matching2 spheres for docking Enter name of sphere cluster file: Enter cluster number to process (<0 = all): Generate surfaces as well as pdb files (/Y)? Enter name for output PDB file name: Cluster 1: 33 spheres. 9001.9002.9003.9004.9005.9006.9007.9008.9009.9010.9011.9012.9013.9014.9015.9016.9017.9018.9019.9020.9021.9022.9023.9024.9025.9026.9027.9028.9029.9030.9031.9032.9033.FORTRAN STOP Coloring matching spheres Creating box around spheres Hydrogen solvent excluded grid being made FORTRAN STOP real 21m36.843s user 20m14.820s sys 0m0.037s Heavy solvent excluded grid being made FORTRAN STOP real 28m25.200s user 28m24.599s sys 0m0.050s