usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 46.9322105263158 -19.9700526315789 102.560157894737 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 877 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 361 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 361 Number of spheres polar: 122, nonpolar: 190, out of current total: 361 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.00315 56.86196 -29.52213 -9.97860 92.61429 107.09924 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 172 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 140 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 59 Final number of output spheres is: 59 Number of polar spheres: 20 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 19