usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): -65.7408 41.5750285714286 -18.6663142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1735 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 931 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 931 Number of spheres polar: 201, nonpolar: 435, out of current total: 931 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -75.73363 -55.76244 31.97100 51.52059 -28.66196 -8.67479 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 340 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 281 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 253 Spheres center of coords (x y z): -66.2019713438735 42.8079333992095 -21.5772274703557 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.94483154189892 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 35