usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 18.6074722222222 -5.75963888888889 8.67047222222222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1946 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 979 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 979 Number of spheres polar: 225, nonpolar: 618, out of current total: 979 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.61073 28.59751 -15.75881 4.00870 1.08788 18.47708 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 514 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 450 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 436 Spheres center of coords (x y z): 16.8025741513761 -8.65420850917432 10.2725085779817 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.20616151231121 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 36