usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): 1.70975757575758 4.84112121212121 7.89390909090909
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1705
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 933
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 932
Number of spheres polar: 310, nonpolar: 474, out of current total: 932
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.26482 11.67846 -5.06088 14.79630 -1.78768 17.57832
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 477
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 412
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 387
Spheres center of coords (x y z): 1.07134217054264 8.0757023255814 6.2697692248062
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.90783164301211
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 33