usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 5.03754166666667 -6.43204166666667 -6.52695833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1535 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 666 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 666 Number of spheres polar: 203, nonpolar: 298, out of current total: 666 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.92489 14.97893 -16.40869 3.53189 -16.23498 3.33520 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 247 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 207 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 3.31007301075269 -9.62796360215054 -3.86894666666666 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.20620309074813 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 24