usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -1.50584615384615 32.1615384615385 -7.12065384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1909 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1019 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1019 Number of spheres polar: 274, nonpolar: 610, out of current total: 1019 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.48310 8.48822 22.19276 42.15979 -17.03300 2.83420 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 560 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 478 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 457 Spheres center of coords (x y z): 0.154587899343545 34.489145536105 -6.30403275711159 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.77791897037105 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 26