usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): -5.55734482758621 -5.43096551724138 9.30748275862069
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1486
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 848
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 848
Number of spheres polar: 258, nonpolar: 390, out of current total: 848
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.51486 4.06269 -15.03175 4.48742 -0.67886 19.30378
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 438
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 378
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 344
Spheres center of coords (x y z): -8.35512700581396 -3.34385892441861 6.96605840116279
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.62484657867625
Final number of output spheres is: 60
Number of polar spheres: 21
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 29