usefragsph not on
There are 46 ligand heavy atoms
Ligand center of coords (x y z): 6.93730434782609 33.9514347826087 8.14428260869565
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2106
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1060
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1060
Number of spheres polar: 276, nonpolar: 594, out of current total: 1060
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.85200 16.90913 23.95324 43.94941 -1.83836 18.09313
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 554
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 493
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 479
Spheres center of coords (x y z): 4.89177920668059 36.4216347599164 7.34186348643006
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.83913882878166
Final number of output spheres is: 60
Number of polar spheres: 25
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 46