usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 19.3831428571429 19.3204285714286 -0.407238095238095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1173 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 642 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 642 Number of spheres polar: 151, nonpolar: 320, out of current total: 642 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.51469 27.57725 9.65400 29.31992 -10.40241 9.59269 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 221 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 191 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 167 Spheres center of coords (x y z): 16.3693702994012 22.4171366467066 0.514423892215569 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.95337891972513 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21