usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 38.2447272727273 6.52681818181818 17.2972727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 791 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 472 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 468 Number of spheres polar: 129, nonpolar: 198, out of current total: 468 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.55790 48.10834 -1.14157 15.26719 7.32841 27.27649 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 163 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): 38.7836203424658 6.51718876712329 19.6427715753425 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.97479097949726 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 11