usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 37.7078181818182 6.76209090909091 16.7174545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 720 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 486 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 482 Number of spheres polar: 130, nonpolar: 198, out of current total: 482 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.44965 47.68991 -2.81657 11.99560 6.72048 26.71613 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 311 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 274 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 274 Spheres center of coords (x y z): 39.5035439416058 6.36530251824817 18.3312430656934 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.50079051628177 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 25 Final number of spheres that are from crystallographic ligand: 11