usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 37.9668181818182 6.69209090909091 16.6455454545455 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 600 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 398 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 386 Number of spheres polar: 94, nonpolar: 163, out of current total: 386 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.93521 47.90615 -1.68119 14.99900 6.65266 26.64400 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 255 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 217 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 209 Spheres center of coords (x y z): 40.1546580861244 6.8725214354067 17.4256776555024 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.49874879114898 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 25 Final number of spheres that are from crystallographic ligand: 11