usefragsph not on
There are 11 ligand heavy atoms
Ligand center of coords (x y z): 38.0494545454545 6.26290909090909 17.386
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 621
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 376
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 371
Number of spheres polar: 83, nonpolar: 153, out of current total: 371
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.20580 48.04159 -2.68589 13.69539 7.40981 27.27259
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 254
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 231
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 206
Spheres center of coords (x y z): 39.8789727669903 6.63460063106796 19.0861203883495
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.0147556245259
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 19
Final number of spheres that are from crystallographic ligand: 11