usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 37.818 7.5188 16.2606 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 677 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 432 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 429 Number of spheres polar: 120, nonpolar: 208, out of current total: 429 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.96208 47.69949 0.92064 17.38725 6.40231 26.24936 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 226 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 39.7259205829597 6.78291479820628 17.9153815695067 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.29448414412313 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 23 Final number of spheres that are from crystallographic ligand: 10