usefragsph not on There are 41 ligand heavy atoms Ligand center of coords (x y z): 19.7252682926829 22.0138780487805 22.1638780487805 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 914 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 426 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 421 Number of spheres polar: 106, nonpolar: 204, out of current total: 421 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.73236 28.33700 12.08063 31.96100 12.65206 32.16176 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 182 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 156 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 109 Spheres center of coords (x y z): 19.8283424770642 22.7156097247706 21.0626252293578 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.29123663060876 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 41