usefragsph not on There are 46 ligand heavy atoms Ligand center of coords (x y z): 19.6915434782609 22.8660434782609 21.5698695652174 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1075 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 439 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 438 Number of spheres polar: 117, nonpolar: 174, out of current total: 438 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.74045 27.79212 12.28300 32.82217 11.66164 31.46873 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 231 Spheres center of coords (x y z): 19.7509852813853 22.9905917316017 21.8275042424242 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.58062953274154 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 46