usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 19.8756511627907 22.0733023255814 22.0493953488372 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 978 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 399 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 397 Number of spheres polar: 114, nonpolar: 158, out of current total: 397 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.08429 27.75918 12.15477 32.02663 12.30758 32.04116 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 181 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 149 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 108 Spheres center of coords (x y z): 20.0119680555556 22.3979525 20.6675905555556 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.21620663800919 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 43