usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 19.6850444444444 22.5842666666667 21.5036 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 953 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 384 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 382 Number of spheres polar: 116, nonpolar: 155, out of current total: 382 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.74489 29.62600 12.14500 32.44869 11.54793 31.44645 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 238 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 214 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 18.7588296774194 24.0997827419355 22.5235627956989 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.92897628859639 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 45