usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 16.4079230769231 26.7818461538462 18.6076153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 718 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 453 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 452 Number of spheres polar: 183, nonpolar: 156, out of current total: 452 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.66501 25.33061 17.57048 36.69237 8.61801 28.58600 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 188 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 155 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 106 Spheres center of coords (x y z): 17.0474581132075 28.7738511320755 21.4396532075472 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.92748440216691 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 13