usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 16.6588125 26.9140625 18.9690625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 697 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 406 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 406 Number of spheres polar: 120, nonpolar: 166, out of current total: 406 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.80412 24.59625 17.04795 36.84961 8.99598 28.95977 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 182 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 155 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 105 Spheres center of coords (x y z): 16.3213182857143 29.5636661904762 22.3088634285714 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.39782804904124 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 16