usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 17.4144 28.4345333333333 18.0634 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 713 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 432 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 425 Number of spheres polar: 156, nonpolar: 167, out of current total: 425 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.44766 23.91713 18.63554 37.93755 8.10500 28.04046 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 170 Spheres center of coords (x y z): 16.7964074117647 29.9237182352941 21.1169651176471 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.03914708097496 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 15