usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 17.66755 27.3218 18.39575 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 660 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 418 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 418 Number of spheres polar: 144, nonpolar: 153, out of current total: 418 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.91061 23.57203 17.46454 37.01353 8.39958 28.38273 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 173 Spheres center of coords (x y z): 16.7278624277457 29.4442693063584 21.4531347398844 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07755427030325 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 20