usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 17.0311428571429 27.1012142857143 18.0639285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 654 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 419 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 419 Number of spheres polar: 155, nonpolar: 173, out of current total: 419 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.58769 23.38427 17.77617 36.97450 8.06427 28.05752 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 225 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 155 Spheres center of coords (x y z): 16.8637654193548 28.7963450967742 21.3954029677419 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.97572349622646 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 14