usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 18.3610555555556 35.4420833333333 39.7746388888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1287 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 758 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 182, nonpolar: 324, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.36682 28.19161 25.46763 45.33983 29.82528 49.59562 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 455 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 396 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 386 Spheres center of coords (x y z): 17.1112338082902 35.9389712176166 39.0334088860104 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.24536880209815 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 36