usefragsph not on
There are 32 ligand heavy atoms
Ligand center of coords (x y z): 2.89403125 23.38284375 29.2883125
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2123
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 958
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 950
Number of spheres polar: 244, nonpolar: 416, out of current total: 950
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.04883 12.88439 13.38983 33.29188 19.28856 39.28300
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 561
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 496
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 451
Spheres center of coords (x y z): 4.00242019955654 20.2990665631929 26.9646941241685
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.94976752370502
Final number of output spheres is: 60
Number of polar spheres: 21
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 32