usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 7.04914814814815 -7.68788888888889 -5.36785185185185
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1266
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 721
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 713
Number of spheres polar: 240, nonpolar: 309, out of current total: 713
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.93793 17.04727 -17.58553 1.92442 -15.35344 4.57257
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 204
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 164
Spheres center of coords (x y z): 4.32772823170732 -9.20325707317073 -4.60620670731707
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.72612087294586
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 27