usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 13.1711818181818 13.904 -9.96751515151515 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1159 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 688 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 673 Number of spheres polar: 146, nonpolar: 335, out of current total: 673 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.22257 23.15563 4.11376 23.88548 -19.86422 0.03117 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 404 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 335 Spheres center of coords (x y z): 11.8856947164179 13.1549054328358 -9.95566092537313 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.2755895826597 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 33