usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 17.7124117647059 5.07585294117647 25.0477647058824 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1234 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 676 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 675 Number of spheres polar: 170, nonpolar: 334, out of current total: 675 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.74836 27.68221 -4.91068 14.66809 15.12690 32.81853 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 379 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 324 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 282 Spheres center of coords (x y z): 15.0796710638298 7.21564921985815 23.8902744680851 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.80586557344574 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 34