usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): 1.70975757575758 4.84112121212121 7.89390909090909
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1799
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 930
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 930
Number of spheres polar: 255, nonpolar: 525, out of current total: 930
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.26482 11.66709 -5.15868 14.83337 -1.97831 17.56225
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 486
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 412
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 395
Spheres center of coords (x y z): 0.765832405063292 7.91215369620253 6.24268524050633
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.00764514827838
Final number of output spheres is: 60
Number of polar spheres: 27
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 33