Distance from surface specified: 1.80 There are 33 ligand heavy atoms Ligand center of coords (x y z): 1.70975757575758 4.84112121212121 7.89390909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 18469 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12442 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12442 Number of spheres polar: 6254, nonpolar: 5078, out of current total: 12442 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.28760 15.70200 -9.14900 18.83840 -6.10300 21.88660 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1550 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 783 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 747 Spheres center of coords (x y z): 2.25907871485944 5.32825087014726 7.97105836680053 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.4398571371197 Final number of output spheres is: 200 Number of polar spheres: 94 Number of nonpolar spheres: 100 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 33