usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 15.6008636363636 67.29 4.26654545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1453 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749 Number of spheres polar: 252, nonpolar: 380, out of current total: 749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.74737 25.59533 57.36398 77.25677 -5.67125 14.24837 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 408 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 340 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 228 Spheres center of coords (x y z): 19.0648236403509 68.6642405701754 6.20882135964912 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.10972262370716 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22