usefragsph not on
There are 34 ligand heavy atoms
Ligand center of coords (x y z): 3.4435 8.11461764705882 4.85058823529412
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1518
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 834
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 834
Number of spheres polar: 265, nonpolar: 384, out of current total: 834
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.51934 13.43707 -1.61631 18.09600 -5.14340 14.84100
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 472
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 406
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 344
Spheres center of coords (x y z): 0.273896279069768 6.7904301744186 5.16282061046512
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.92811204548988
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 34