usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 76.036037037037 26.3751481481481 92.1971111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1665 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 731 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 731 Number of spheres polar: 197, nonpolar: 330, out of current total: 731 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 66.04002 85.73317 16.39666 36.37035 82.34401 101.95792 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 230 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 192 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 164 Spheres center of coords (x y z): 77.6582416463415 23.1697065243902 90.5701518292683 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.98544755987256 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 27