There are 24 ligand heavy atoms Ligand center of coords (x y z): 15.361625 66.780125 5.35808333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15985 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 10304 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 10304 Number of spheres polar: 6396, nonpolar: 3087, out of current total: 10304 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.36600 27.36080 54.78080 78.74340 -6.64040 17.35740 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1394 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 638 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 599 Spheres center of coords (x y z): 18.6239989983306 67.2997585976628 5.06189248747913 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.445053876414 Final number of output spheres is: 120 Number of polar spheres: 65 Number of nonpolar spheres: 53 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24