usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 15.361625 66.780125 5.35808333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1428 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 665 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 665 Number of spheres polar: 213, nonpolar: 347, out of current total: 665 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.77764 25.32815 56.86792 76.77436 -4.63137 15.33629 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 215 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 130 Spheres center of coords (x y z): 18.5863736153846 68.0120245384615 7.07386046153846 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.63249171401307 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24