Distance from surface specified: 1.80 There are 24 ligand heavy atoms Ligand center of coords (x y z): 15.361625 66.780125 5.35808333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15985 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13368 WARNING: removing a crystallographic sphere that is distance 1.8012720505243 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12979 Number of spheres polar: 7767, nonpolar: 4192, out of current total: 12979 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.36600 29.36040 52.78420 80.76640 -8.63880 19.33940 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1700 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 937 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 931 Spheres center of coords (x y z): 18.9125542427497 65.8423667024704 5.04919334049409 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 13.43183472857 Final number of output spheres is: 200 Number of polar spheres: 139 Number of nonpolar spheres: 59 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 23