usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 20.0720869565217 38.8275652173913 29.69 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1208 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 465 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 465 Number of spheres polar: 123, nonpolar: 313, out of current total: 465 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.16367 29.88203 28.84508 48.80232 19.82907 39.62205 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 222 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 191 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): 19.9967594244604 38.3692189928057 29.5023812230216 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.26150000755543 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 23