usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 18.6207619047619 4.8387619047619 72.2860476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1133 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 542 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 527 Number of spheres polar: 128, nonpolar: 348, out of current total: 527 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.81289 28.61740 -5.03475 14.10005 62.34092 82.21091 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 221 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 184 Spheres center of coords (x y z): 20.2009514673913 3.83096570652174 71.8110626630435 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.70194166254905 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 21