usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 5.20769565217391 19.6276086956522 28.6901304347826 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1178 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 453 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 453 Number of spheres polar: 171, nonpolar: 255, out of current total: 453 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.75020 15.20739 9.85060 29.22620 18.87355 38.68220 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 133 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 106 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 69 Spheres center of coords (x y z): 4.92911333333333 19.3484726086956 29.034474057971 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.07374846325043 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 23