usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 4.62695833333333 19.4689583333333 29.1414583333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1252
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 457
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 457
Number of spheres polar: 144, nonpolar: 280, out of current total: 457
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.32740 14.62312 12.46747 28.65455 19.22445 39.00857
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 217
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 186
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 141
Spheres center of coords (x y z): 5.1046434751773 19.5004966666667 29.3352762411347
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.13899336841285
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 44
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 24