usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -14.728619047619 -13.9092380952381 -28.847619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 922 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 389 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 388 Number of spheres polar: 99, nonpolar: 257, out of current total: 388 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -24.72271 -4.83922 -23.64494 -4.51155 -38.77667 -19.10197 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 111 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 90 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 66 Spheres center of coords (x y z): -14.8062059090909 -14.7771034848485 -28.7670160606061 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.22212658385776 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 21