usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 13.6993571428571 23.679 46.7412857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1528 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 605 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 605 Number of spheres polar: 161, nonpolar: 410, out of current total: 605 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.79864 23.68330 13.70543 33.53277 36.78270 56.68793 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 317 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 266 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 200 Spheres center of coords (x y z): 13.24314015 24.91578225 45.7046276 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.72938205865749 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 52 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 28